Items where LSTM Author is "Lewis, Joseph"

Gallichan, Sarah, Forrest, Sally, Picton-Barlow, Esther, McKeown, Claudia, Moore, Maria, Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188 and Graf, Fabrice (2024) 'Optimized methods for the targeted surveillance of extended-spectrum beta-lactamase-producing <i>Escherichia coli</i> in human stool'. Microbiology Spectrum. (In Press)

Ackers-Johnson, Gavin, Pulmones, Ralfh, McLaughlan, Danielle, Doyle, Amy, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Neal, Tim, Todd, Stacy and Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088 (2024) 'Investigating the changing taxonomy and antimicrobial resistance of bacteria isolated from door handles in a new infectious disease ward pre- and post-patient admittance'. Microbiology Spectrum, Vol 12, Issue 12, e01797-24.

Graf, Fabrice ORCID: https://orcid.org/0000-0003-1132-5348, Goodman, Richard, Gallichan, Sarah, Forrest, Sally, Picton-Barlow, Esther, Fraser, Alice, Phan, Minh-Duy, Mphasa, Madalitso, Hubbard, Alasdair ORCID: https://orcid.org/0000-0001-6668-9179, Musicha, Patrick, Schembri, Mark A., Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088, Edwards, Thomas, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188 and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2024) 'Molecular mechanisms of re-emerging chloramphenicol susceptibility in extended-spectrum beta-lactamase-producing Enterobacterales'. Nature Communications, Vol 15, Issue 1, e9019.

Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, Pearse, Oliver, Zuza, Allan, Bilima, Sithembile, Msefula, Chisomo, Musicha, Patrick, Siyabu, Patriciah, Tewesa, Edith, Graf, Fabrice, Lester, Rebecca, Lissauer, Samantha, Cornick, Jennifer, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Kawaza, Kondwani, Thomson, Nicholas R. and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2024) 'Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations'. Genome Medicine, Vol 16, Issue 1, e67.

Alhassan, Yussif ORCID: https://orcid.org/0000-0003-4155-546X, Otiso, Lilian, Okoth, Linet, Murray, Lois, Hemingway, Charlotte, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Oguche, Mandela, Doyle, Vicki, Muturi, Nelly, Ogwang, Emily, Barsosio, Hellen and Taegtmeyer, Miriam ORCID: https://orcid.org/0000-0002-5377-2536 (2024) 'Four antenatal care visits by four months of pregnancy and four vital tests for pregnant mothers: Impact of a community-facility health systems strengthening intervention in Migori county, Kenya.'. BMC Pregnancy and Childbirth, Vol 24, e224.

Bridgen, Jessica R. E., Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Todd, Stacy, Taegtmeyer, Miriam ORCID: https://orcid.org/0000-0002-5377-2536, Read, Jonathan M. and Jewell, Chris P. (2024) 'A Bayesian approach to identifying the role of hospital structure and staff interactions in nosocomial transmission of SARS-CoV-2'. Journal of the Royal Society Interface, Vol 21, Issue 212.

Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, Pearse, Oliver, Musicha, Patrick, Graf, Fabrice, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188 and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2023) Data for 'Longitudinal analysis within one hospital in sub-Saharan Africa over 20 years reveals repeated replacements of dominant clones of Klebsiella pneumoniae and stresses the importance to include temporal patterns for vaccine design considerations'. [Data Collection]

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Mphasa, Madalitso, Banda, Rachel, Beale, Mathew A, Mallewa, Jane, Anscome, Catherine, Zuza, Allan, Roberts, Adam P, Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, Thomson, Nicholas R and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2023) 'Genomic analysis of extended-spectrum beta-lactamase (ESBL) producing Escherichia coli colonising adults in Blantyre, Malawi reveals previously undescribed diversity'. Microbial Genomics, Vol 9, Issue 6.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Mphasa, Madalitso, Banda, Rachel, Beala, Mathew A., Mallewa, Jane, Anscombe, Catherine, Zuza, Allan, Roberts, Adam P., Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, Thomson, Nicholas R. and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2023) Dataset for the article: Genomic analysis of extended-spectrum beta-lactamase (ESBL) producing Escherichia coli colonising adults in Blantyre, Malawi reveals previously undescribed diversity. [Data Collection]

Cocker, Derek, Chidziwisano, Kondwani, Mphasa, Madalitso, Mwapasa, Taonga, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Rowlingson, Barry, Sammarro, Melodie, Bakali, Winnie, Salifu, Chifundo, Zuza, Allan, Charles, Mary, Mandula, Tamandani, Maiden, Victor, Amos, Stevie, Jacob, Shevin T, Kajumbula, Henry, Mugisha, Lawrence, Musoke, David, Byrne, Rachel, Edwards, Thomas, Lester, Rebecca ORCID: https://orcid.org/0000-0002-0259-9630, Elviss, Nicola, Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088, Singer, Andrew C, Jewell, Christopher, Morse, Tracy and Feasey, Nicholas A (2023) 'Investigating One Health risks for human colonisation with extended spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Malawian households: a longitudinal cohort study'. Lancet Microbe, Vol 4, Issue 7, e534-e543.

Price, Vivien, Ngwira, Lucky Gift, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Baker, Kate S., Peacock, Sharon J., Jauneikaite, Elita and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2023) 'A systematic review of economic evaluations of whole-genome sequencing for the surveillance of bacterial pathogens'. Microbial Genomics, Vol 9, Issue 2, e000947.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Mphasa, Madalitso, Banda, Rachel, Beale, Mathew A, Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, Mallewa, Jane, Jewell, Christopher, Faragher, Brian, Thomson, Nicholas R and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2022) 'Colonisation dynamics of extended spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults'. Nature Microbiology, Vol 7, Issue 10, pp. 1593-1604.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Mphasa, Madlitso, Keyala, Lucy, Banda, Rachel, Smith, Emma, Duggan, Jackie, Brooks, Tim, Catton, Matthew, Mallewa, Jane, Katha, Grace, Gordon, Stephen ORCID: https://orcid.org/0000-0001-6576-1116, Faragher, Brian, Gordon, Melita A, Rylance, Jamie ORCID: https://orcid.org/0000-0002-2323-3611 and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2022) 'A Longitudinal, Observational Study of Etiology and Long-Term Outcomes of Sepsis in Malawi Revealing the Key Role of Disseminated Tuberculosis'. Clinical Infectious Diseases, Vol 74, Issue 10, pp. 1840-1849.

Divala, Henry, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Bulterys, Michelle, Lutje, Vittoria, Corbett, Elizabeth, Schumacher, Samuel and MacPherson, Peter ORCID: https://orcid.org/0000-0002-0329-9613 (2022) 'Missed opportunities for diagnosis and treatment in patients with tuberculosis symptoms: a systematic review'. Public health action, Vol 12, Issue 1, pp. 10-17.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Mphasa, Madalitso, Banda, Rachel, Beale, Matthew, Mallewa, Jane, Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, Thomson, Nicholas and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2022) 'Genomic and antigenic diversity of colonising Klebsiella pneumoniae isolates mirrors that of invasive isolates in Blantyre, Malawi'. Microbial Genomics, Vol 8, Issue 3, e000778.

Nightingale, Rebecca, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Monsell, Katelyn Rhiannon, Jones, Lewis, Smith, Christopher, Kundu, Shantanu, Bond, Helena, Burhan, Hassan, Fletcher, Tom, Blanchard, Thomas, Beadsworth, Mike, Hampshire, Peter, Gautam, Manish, Todd, Stacy, Jones, Gareth and Aston, Stephen (2021) 'CPAP delivered outside critical care during the second wave of COVID-19: outcomes from a UK respiratory surge unit'. BMJ Open Respiratory Research, Vol 8, Issue 1, e000907.

Graham, Gemma, Taegtmeyer, Miriam ORCID: https://orcid.org/0000-0002-5377-2536, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188 and Subramanian, Sreedhar (2021) 'Gastrointestinal symptoms involvement in hospitalised COVID-19 patients in Liverpool, UK: a descriptive cross-sectional, single-centre study'. Clinical medicine, Vol 21, Issue Suppl 2, pp. 23-24.

Nightingale, Rebecca, Nwosu, Nneka, Kutubudin, Farheen, Fletcher, Tom, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Frost, Frederick, Haigh, Kathryn, Robinson, Ryan, Kumar, Ayesha, Jones, Gareth, Brown, Deborah, Abouyannis, Michael ORCID: https://orcid.org/0000-0003-4856-4334, Beadsworth, Mike, Hampshire, Peter, Aston, Stephen, Gautam, Manish and Burhan, Hassan (2020) 'Is continuous positive airway pressure (CPAP) a new standard of care for type 1 respiratory failure in COVID-19 patients? A retrospective observational study of a dedicated COVID-19 CPAP service'. BMJ, Vol 7, e000639.

Barr, David A, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405, Schutz, Charlotte, Kerkhoff, Andrew D, Jacob, Shevin ORCID: https://orcid.org/0000-0003-2425-9394, Andrews, Ben, Kelly, Paul, Lakhi, Shabir, Muchemwa, Levy, Bacha, Helio A, Hadad, David J, Bedell, Richard, van Lettow, Monique, Zachariah, Rony, Crump, John A, Alland, David, Corbett, Elizabeth L, Gopinath, Krishnamoorthy, Singh, Sarman, Griesel, Rulan, Maartens, Gary, Mendelson, Marc, Ward, Amy M, Parry, Christopher, Talbot, Elizabeth A, Munseri, Patricia, Dorman, Susan E, Martinson, Neil, Shah, Maunank, Cain, Kevin, Heilig, Charles M, Varma, Jay K, Gottberg, Anne von, Sacks, Leonard, Wilson, Douglas, Squire, Bertie ORCID: https://orcid.org/0000-0001-7173-9038, Lalloo, David ORCID: https://orcid.org/0000-0001-7680-2200, Davies, Gerry and Meintjes, Graeme (2020) 'Mycobacterium tuberculosis bloodstream infection prevalence, diagnosis, and mortality risk in seriously ill adults with HIV: a systematic review and meta-analysis of individual patient data'. Lancet Infectious Diseases, Vol 20, Issue 6, pp. 742-752.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Lester, Rebecca ORCID: https://orcid.org/0000-0002-0259-9630, Mphasa, Madalistso, Banda, Rachel, Edwards, Thomas, Thomson, Nicholas and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2020) 'Emergence of carbapenemase producing Enterobacteriaceae, Malawi'. Journal of Global Antimicrobial Resistance, Vol 20, pp. 225-227.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188 (2019) Causes and consequences of adult sepsis in Blantyre, Malawi, Thesis (Doctoral), Liverpool School of Tropical Medicine.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Lester, Rebecca ORCID: https://orcid.org/0000-0002-0259-9630, Garner, Paul ORCID: https://orcid.org/0000-0002-0607-6941 and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2019) 'Gut mucosal colonisation with extended-spectrum beta-lactamase producing Enterobacteriaceae in sub-Saharan Africa: a systematic review and meta-analysis'. Wellcome Open Research, Vol 4, Issue 160.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 and Rylance, Jamie ORCID: https://orcid.org/0000-0002-2323-3611 (2019) 'Aetiology and outcomes of sepsis in adults in sub-Saharan Africa: a systematic review and meta-analysis.'. Critical Care, Vol 23, Issue 1, p. 212.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Henrion, Marc ORCID: https://orcid.org/0000-0003-1242-839X and Rylance, Jamie ORCID: https://orcid.org/0000-0002-2323-3611 (2018) 'Validity of the qSOFA Score in Low- and Middle-Income Countries'. The Journal of the American Medical Association (JAMA), Vol 320, Issue 19, pp. 2038-2039.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Savage, Richard S., Beeching, Nicholas ORCID: https://orcid.org/0000-0002-7019-8791, Beadsworth, Mike, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 and Covington, James A. (2017) 'Identifying volatile metabolite signatures for the diagnosis of bacterial respiratory tract infection using electronic nose technology: A pilot study'. PLoS ONE, Vol 12, Issue 12, e0188879.

Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, MacPherson, Peter ORCID: https://orcid.org/0000-0002-0329-9613, Adams, Emily ORCID: https://orcid.org/0000-0002-0816-2835, Ochodo, Eleanor, Sands, Anita and Taegtmeyer, Miriam ORCID: https://orcid.org/0000-0002-5377-2536 (2015) 'Field accuracy of fourth-generation rapid diagnostic tests for acute HIV-1: a systematic review.'. AIDS, Vol 29, Issue 18, pp. 2465-2471.