Items where Subject is "QU Biochemistry > QU 26.5 Informatics. Automatic data processing. Computers"

Article

Alonso, Luis L., van Thiel, Jory, Slagboom, Julien, Dunstan, Nathan, Modahl, Cassandra, Jackson, Timothy N. W., Samanipour, Saer and Kool, Jeroen (2024) 'Studying Venom Toxin Variation Using Accurate Masses from Liquid Chromatography–Mass Spectrometry Coupled with Bioinformatic Tools'. Toxins, Vol 16, Issue 4, p. 181.

Archer, John, Whiteley, Gareth, Casewell, Nicholas ORCID: https://orcid.org/0000-0002-8035-4719, Harrison, Robert and Wagstaff, Simon ORCID: https://orcid.org/0000-0003-0577-5537 (2014) 'VTBuilder: a tool for the assembly of multi isoform transcriptomes.'. BMC Bioinformatics, Vol 15, e389.

Chandor‑Proust, Alexia, Bibby, Jaclyn, Régent‑Kloeckner, Myriam, Roux, Jessica, Guittard‑Crilat, Emilie, Poupardin, Rodolphe, Riaz, Muhammad Asam, Paine, Mark ORCID: https://orcid.org/0000-0003-2061-7713, Dauphin‑Villemant, Chantal, Reynaud, Stéphane and David, Jean‑Philippe (2013) 'The central role of mosquito cytochrome P450 CYP6Zs in insecticide detoxification revealed by functional expression and structural modelling'. Biochemical Journal, Vol 455, Issue 1, pp. 75-85.

Cock, P. J. A., Rodrigues Antao, Tiago, Chang, J. T., Chapman, B. A., Cox, C. J., Dalke, A., Friedberg, I., Hamelryck, T., Kauff, F., Wilczynski, B. and de Hoon, M. J. L. (2009) 'Biopython: freely available Python tools for computational molecular biology and bioinformatics'. Bioinformatics, Vol 25, Issue 11, pp. 1422-1423.

Dong, Gaohong, Huang, Bo, Verbeeck, Johan, Cui, Ying, Song, James, Gamalo‐Siebers, Margaret, Wang, Duolao ORCID: https://orcid.org/0000-0003-2788-2464, Hoaglin, David C., Seifu, Yodit, Mütze, Tobias and Kolassa, John (2022) 'Win statistics (win ratio, win odds, and net benefit) can complement one another to show the strength of the treatment effect on time‐to‐event outcomes'. Pharmaceutical Statistics, Vol 22, Issue 1, pp. 20-33.

Ferber, Georg, Wang, Duolao ORCID: https://orcid.org/0000-0003-2788-2464 and Täubel, Jörg (2014) 'Concentration-effect modeling based on change from baseline to assess the prolonging effect of drugs on QTc together with an estimate of the circadian time course'. The Journal of Clinical Pharmacology, Vol 54, Issue 12, pp. 1400-1406.

Hall, Adam J., Chappell, Michael J., Aston, John A.D. and Ward, Stephen ORCID: https://orcid.org/0000-0003-2331-3192 (2014) 'Reprint of “Pharmacokinetic modelling of the anti-malarial drug artesunate and its active metabolite dihydroartemisinin”'. Computer Methods and Programs in Biomedicine, Vol 114, Issue 3, e14-e28.

Hearn, Jack ORCID: https://orcid.org/0000-0003-3358-4949 and Little, Tom J. (2022) 'Daphnia magna egg piRNA cluster expression profiles change as mothers age'. BMC Genomics, Vol 23, Issue 1, e429.

Henrion, Marc (2023) 'Relaxation of the parameter independence assumption in the bootComb R package'. Experimental Results, Vol 4, e1.

Ingham, Victoria ORCID: https://orcid.org/0000-0001-5708-4741, Bennett, Andrew, Peng, Duo, Wagstaff, Simon ORCID: https://orcid.org/0000-0003-0577-5537 and Ranson, Hilary ORCID: https://orcid.org/0000-0003-2332-8247 (2020) 'IR-TEx: An Open Source Data Integration Tool for Big Data Transcriptomics Designed for the Malaria Vector Anopheles gambiae'. Journal of Visualized Experiments (JoVE), Issue 155, e60721.

Jones, Sam, Kay, Katherine, Hodel, EvaMaria, Gruenberg, Maria, Lerch, Anita, Felger, Ingrid and Hastings, Ian ORCID: https://orcid.org/0000-0002-1332-742X (2021) 'Should deep-sequenced amplicons become the new gold-standard for analysing malaria drug clinical trials?'. Antimicrobial Agents and Chemotherapy, Vol 65, Issue 10, e00437-21.

Killeen, Gerry ORCID: https://orcid.org/0000-0002-8583-8739 and Chitnis, Nakul (2014) 'Potential causes and consequences of behavioural resilience and resistance in malaria vector populations: a mathematical modelling analysis'. Malaria Journal, Vol 13, e97.

Kiware, Samson S., Russell, Tanya L., Mtema, Zacharia J., Malishee, Alpha D., Chaki, Prosper, Lwetoijera, Dickson, Chanda, Javan, Chinula, Dingani, Majambere, Silas, Gimnig, John E., Smith, Thomas A. and Killeen, Gerry ORCID: https://orcid.org/0000-0002-8583-8739 (2016) 'A generic schema and data collection forms applicable to diverse entomological studies of mosquitoes'. Source Code for Biology and Medicine, Vol 11, Issue 4.

Longbottom, Joshua, Krause, Ana, Torr, Steve ORCID: https://orcid.org/0000-0001-9550-4030 and Stanton, Michelle ORCID: https://orcid.org/0000-0002-1754-4894 (2020) 'Quantifying geographic accessibility to improve efficiency of entomological monitoring'. PLoS Neglected Tropical Diseases, Vol 14, Issue 3, e0008096.

Milner, Danny A, Vareta, Jimmy, Valim, Clarissa, Montgomery, Jacqui, Daniels, Rachel F, Volkman, Sarah K, Neafsey, Daniel E, Park, Daniel J, Schaffner, Stephen F, Mahesh, Nira C, Barnes, Kayla G, Rosen, David M, Lukens, Amanda K, Van-Tyne, Daria, Wiegand, Roger C, Sabeti, Pardis C, Seydel, Karl B, Glover, Simon J, Kamiza, Steve, Molyneux, Malcolm E, Taylor, Terrie E and Wirth, Dyann F (2012) 'Human cerebral malaria and Plasmodium falciparum genotypes in Malawi'. Malaria Journal, Vol 11, e35.

Ndhlovu, Victor, Kiran, Anmol, Sloan, Derek, Mandala, Wilson, Kontogianni, Konstantina, Kamdolozi, Mercy, Caws, Maxine ORCID: https://orcid.org/0000-0002-9109-350X and Davies, Gerry (2019) 'Genetic diversity of Mycobacterium tuberculosis clinical isolates in Blantyre, Malawi'. Heliyon, Vol 5, Issue 10, e02638.

Obolski, Uri, Gori, Andrea, Lourenço, José, Thompson, Craig, Thompson, Robin, French, Neil, Heyderman, Robert S and Gupta, Sunetra (2019) 'Identifying genes associated with invasive disease in S. pneumoniae by applying a machine learning approach to whole genome sequence typing data.'. Scientific Reports, Vol 9, Issue 1, p. 4049.

Okumu, Fredros O, Kiware, Samson S, Moore, Sarah J and Killeen, Gerry ORCID: https://orcid.org/0000-0002-8583-8739 (2013) 'Mathematical evaluation of community level impact of combining bed nets and indoor residual spraying upon malaria transmission in areas where the main vectors are Anopheles arabiensis mosquitoes'. Parasites & Vectors, Vol 6, e17.

Rock, Kat S., Stone, Chris M., Hastings, Ian ORCID: https://orcid.org/0000-0002-1332-742X, Keeling, Matt J., Torr, Steve ORCID: https://orcid.org/0000-0001-9550-4030 and Chitnis, Nakul (2015) 'Mathematical Models of Human African Trypanosomiasis Epidemiology (Chapter 3)'. Advances in Parasitology, Vol 87, pp. 53-133.

Rodrigues Antao, Tiago, Lopes, A., Lopes, R. J., Beja-Pereira, A. and Luikart, G. (2008) 'LOSITAN: A workbench to detect molecular adaptation based on a F-st-outlier method'. Bmc Bioinformatics, Vol 9, Issue 323.

Rodrigues Antao, Tiago and Beaumont, Mark A. (2011) 'Mcheza: a workbench to detect selection using dominant markers.'. Bioinformatics (Oxford, England), Vol 27, Issue 12, pp. 1717-8.

Song, James, Verbeeck, Johan, Huang, Bo, Hoaglin, David C., Gamalo-Siebers, Margaret, Seifu, Yodit, Wang, Duolao ORCID: https://orcid.org/0000-0003-2788-2464, Cooner, Freda and Dong, Gaohong (2022) 'The win odds: statistical inference and regression'. Journal of Biopharmaceutical Statistics, Vol 33, Issue 2, pp. 140-150.

Stanton, Michelle ORCID: https://orcid.org/0000-0002-1754-4894 and Diggle, Peter J. (2013) 'Geostatistical analysis of binomial data: generalised linear or transformed Gaussian modelling?'. Environmetrics, Vol 24, Issue 3, pp. 158-171.

Tansirichaiya, Supathep, Rahman, Ajijur and Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088 (2019) 'The Transposon Registry'. Mobile DNA, Vol 10, e40.

Truscott, James E, Hollingsworth, Deirdre, Brooker, Simon J and Anderson, Roy M (2014) 'Can chemotherapy alone eliminate the transmission of soil transmitted helminths?'. Parasites & Vectors, Vol 7, e266.

Vale, Glyn A., Hargrove, John W., Lehane, Mike, Solano, Philippe and Torr, Steve ORCID: https://orcid.org/0000-0001-9550-4030 (2015) 'Optimal Strategies for Controlling Riverine Tsetse Flies Using Targets: A Modelling Study'. PLoS Neglected Tropical Diseases, Vol 9, Issue 3, e0003615.

Young, Neil David, Kinkar, Liina, Stroehlein, Liina, Korhonen, Pasi K., Stothard, j. Russell ORCID: https://orcid.org/0000-0002-9370-3420, Rollinson, David and Gasser, Robin B. (2021) 'Mitochondrial genome of Bulinus truncatus (Gastropoda: Lymnaeoidea): implications for snail systematics and schistosome epidemiology'. Current Research in Parasitology and Vector-Borne Diseases, Vol 2021, Issue 1, p. 100017.

Thesis

Jones, Sam (2019) Computer modelling approaches for improving analysis of 1 anti-malarial clinical trials, Thesis (Doctoral), Liverpool School of Tropical Medicine.