Items where Subject is "QW Microbiology and Immunology > QW 50 Bacteria (General). Bacteriology. Archaea"

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Abotsi, Regina E., Dube, Felix S., Rehman, Andrea M., Claassen-Weitz, Shantelle, Xia, Yao, Simms, Victoria, Mwaikono, Kilaza S., Gardner-Lubbe, Sugnet, McHugh, Grace, Ngwira, Lucky-Gift, Kwambana-Adams, Brenda, Heyderman, Robert S., Odland, Jon Ø., Ferrand, Rashida A. and Nicol, Mark P. (2023) 'Sputum bacterial load and bacterial composition correlate with lung function and are altered by long-term azithromycin treatment in children with HIV-associated chronic lung disease'. Microbiome, Vol 11, Issue 1, e29.

Adler, Hugh ORCID: https://orcid.org/0000-0003-4437-2298, Ferreira, Daniela ORCID: https://orcid.org/0000-0002-0594-0902, Gordon, Stephen ORCID: https://orcid.org/0000-0001-6576-1116 and Rylance, Jamie ORCID: https://orcid.org/0000-0002-2323-3611 (2017) 'Pneumococcal capsular polysaccharide immunity in the elderly.'. Clinical and vaccine immunology : CVI, Vol 24, Issue 6, e00004-17.

Allen, Stephen ORCID: https://orcid.org/0000-0001-6675-249X (2015) 'The Potential of Probiotics to Prevent Clostridium difficile Infection'. Infectious Disease Clinics of North America, Vol 29, Issue 1, pp. 135-144.

Ashton, Philip M, Owen, Siân V, Kaindama, Lukeki, Rowe, Will P M, Lane, Chris R, Larkin, Lesley, Nair, Satheesh, Jenkins, Claire, de Pinna, Elizabeth M, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405, Hinton, Jay C D and Dallman, Timothy J (2017) 'Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa.'. Genome Medicine, Vol 9, Issue 1, p. 92.

Behbahani, A., Dutton, Tim J., Davies, N., Townson, Harold and Sinkins, Steven P. (2005) 'Population differentiation and Wolbachia phylogeny in mosquitoes of the Aedes scutellaris group'. Medical and Veterinary Entomology, Vol 19, Issue 1, pp. 66-71.

Browne, Annie J, Chipeta, Michael G, Fell, Frederick J, Haines-Woodhouse, Georgina, Kashef Hamadani, Bahar H, Kumaran, Emmanuelle A P, Robles Aguilar, Gisela, McManigal, Barney, Andrews, Jason R, Ashley, Elizabeth A, Audi, Allan, Baker, Stephen, Banda, Happy C, Basnyat, Buddha, Bigogo, Godfrey, Ngoun, Chanpheaktra, Chansamouth, Vilada, Chunga, Angeziwa, Clemens, John D, Davong, Viengmon, Dougan, Gordon, Dunachie, Susanna J, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405, Garrett, Denise O, Gordon, Melita A, Hasan, Rumina, Haselbeck, Andrea H, Henry, Nathaniel J, Heyderman, Robert S, Holm, Marianne, Jeon, Hyon Jin, Karkey, Abhilasha, Khanam, Farhana, Luby, Stephen P, Malik, Faisal Riaz, Marks, Florian, Mayxay, Mayfong, Meiring, James E, Moore, Catrin E, Munywoki, Patrick K, Musicha, Patrick, Newton, Paul N, Pak, Gideok, Phommasone, Koukeo, Pokharel, Sunil, Pollard, Andrew J, Qadri, Firdausi, Qamar, Farah N, Rattanavong, Sayaphet, Reiner, Bobby, Roberts, Tamalee, Saha, Samir, Saha, Senjuti, Shakoor, Sadia, Shakya, Mila, Simpson, Andrew J, Stanaway, Jeff, Turner, Claudia, Turner, Paul, Verani, Jennifer R, Vongsouvath, Manivanh, Day, Nicholas P J, Naghavi, Mohsen, Hay, Simon I, Sartorius, Benn and Dolecek, Christiane (2024) 'Estimating the subnational prevalence of antimicrobial resistant Salmonella enterica serovars Typhi and Paratyphi A infections in 75 endemic countries, 1990–2019: a modelling study'. Lancet Global Health, Vol 12, Issue 3, e406-e418.

Bunn, J., MacKay, W. G., Thomas, J. E., Reid, D. C. and Weaver, L. T. (2002) 'Detection of Helicobacter pylori DNA in drinking water biofilms: implications for transmission in early life'. Letters in Applied Microbiology, Vol 34, Issue 6, pp. 450-454.

Coulter, John B.S., Brian, J., Coulter, S., Lloyd, David A., Jones, Matthew, Cooper, John C., McCormick, Maxwell S., Clarke, Raymond W. and Tawil, Mohommed I. (2006) 'Nontuberculous mycobacterial adenitis: Effectiveness of chemotherapy following incomplete excision'. Acta Paediatrica, Vol 95, Issue 2, pp. 182-188.

Dada, Nsa, Vannavong, Nanthasane, Seidu, Razak, Lenhart, Audrey, Stenström, Thor Axel, Chareonviriyaphap, Theeraphap and Overgaard, Hans J. (2013) 'Relationship between Aedes aegypti production and occurrence of Escherichia coli in domestic water storage containers in rural and sub-urban villages in Thailand and Laos'. Acta Tropica, Vol 126, Issue 3, pp. 177-185.

Damas, Marcelo Silva Folhas, Ferreira, Roumayne Lopes, Campanini, Emeline Boni, Soares, Gabriela Guerrera, Campos, Leslie Camelo, Laprega, Pedro Mendes, Soares da Costa, Andrea, Freire, Caio César de Melo, Pitondo-Silva, André, Cerdeira, Louise, Cunha, Anderson Ferreira da and Pranchevicius, Maria-Cristina da Silva (2022) 'Whole genome sequencing of the multidrug-resistant Chryseobacterium indologenes isolated from a patient in Brazil'. Frontiers in medicine, Vol 9, e931379.

Dillon, Rod, Webster, G., Weightman, A. J., Dillon, V. M., Blanford, S. and Charnley, A. K. (2008) 'Composition of Acridid gut bacterial communities as revealed by 16S rRNA gene analysis'. Journal of Invertebrate Pathology, Vol 97, Issue 3, pp. 265-272.

Dillon, Rod, Webster, G., Weightman, A. J. and Keith Charnley, A. (2009) 'Diversity of gut microbiota increases with aging and starvation in the desert locust'. Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, pp. 1-9.

Edwards, Thomas, Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, van Aartsen, Jon, Howard, Alex, Roberts, Paul, Corless, Caroline, Fraser, Alice, Williams, Chris, Bulgasim, Issra, Cuevas, Luis ORCID: https://orcid.org/0000-0002-6581-0587, Parry, Christopher M., Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088, Adams, Emily ORCID: https://orcid.org/0000-0002-0816-2835, Mason, Jenifer and Hubbard, Alasdair ORCID: https://orcid.org/0000-0001-6668-9179 (2022) 'Piperacillin/tazobactam resistant, cephalosporin susceptible Escherichia coli bloodstream infections are driven by multiple acquisition of resistance across diverse sequence types'. Microbial Genomics, Vol 8, Issue 4, e000789.

Edwards, Thomas, Sasaki, Shugo, Williams, Chris, Hobbs, Glyn, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405, Evans, Katie and Adams, Emily ORCID: https://orcid.org/0000-0002-0816-2835 (2018) 'Speciation of common Gram-negative pathogens using a highly multiplexed high resolution melt curve assay'. Scientific Reports, Vol 8, e1114.

Ellis, Richard J., Bruce, Kenneth D., Jenkins, Claire, Stothard, Russell ORCID: https://orcid.org/0000-0002-9370-3420, Ajarova, Lilly, Mugisha, Lawrence and Viney, Mark E. (2013) 'Comparison of the Distal Gut Microbiota from People and Animals in Africa'. PLoS ONE, Vol 8, Issue 1, e54783.

Evans, Nicholas J., Timofte, Dorina, Isherwood, Diana R., Brown, Jennifer M., Williams, Jonathan M., Sherlock, Kenneth, Lehane, Mike, Murray, Richard D., Birtles, Richard J., Anthony Hart, C. and Carter, Stuart D. (2012) 'Host and environmental reservoirs of infection for bovine digital dermatitis treponemes'. Veterinary Microbiology, Vol 156, Issue 1-2, pp. 102-109.

Fenollar, F., La Scola, B., Inokuma, H., Dumler, J.S., Taylor, Mark ORCID: https://orcid.org/0000-0003-3396-9275 and Raoult, D. (2003) 'Culture and phenotypic characterization of a Wolbachia pipientis isolate'. Journal of Clinical Microbiology, Vol 41, Issue 12, pp. 5434-5441.

Ferreira, Daniela ORCID: https://orcid.org/0000-0002-0594-0902, Jambo, Kondwani ORCID: https://orcid.org/0000-0002-3195-2210 and Gordon, Stephen ORCID: https://orcid.org/0000-0001-6576-1116 (2011) 'Experimental human pneumococcal carriage models for vaccine research'. Trends in Microbiology, Vol 19, Issue 9, pp. 464-470.

Foo, Aidan, Brettell, Laura, Nichols, Holly L., Medina Muñoz, Miguel, Lysne, Jessica A., Dhokiya, Vish, Hoque, Ananya, Brackney, Doug E., Caragata, Eric P., Hutchinson, Michael L., Jacobs-Lorena, Marcelo, Lampe, David J., Martin, Edwige, Valiente Moro, Claire, Povelones, Michael, Short, Sarah M., Steven, Blaire, Xu, Jiannong, Paustian, Timothy D., Rondon, Michelle R., Hughes, Grant ORCID: https://orcid.org/0000-0002-7567-7185, Coon, Kerri L. and Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756 (2024) 'MosAIC: An annotated collection of mosquito-associated bacteria with high-quality genome assemblies'. PLoS Biology, Vol 22, Issue 11, e3002897.

Fuxelius, H. H., Darby, Alistair C., Cho, N. H. and Andersson, S. G. E. (2008) 'Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction'. Genome Biology, Vol 9, Issue 2, R42.

Garrido-Bautista, Jorge, Cláudia Norte, Ana, Moreno-Rueda, Gregorio and Nadal-Jimenez, Pol (2024) 'Ecological determinants of prevalence of the male-killing bacterium Arsenophonus nasoniae'. Journal of Invertebrate Pathology, Vol 203, p. 108073.

Gomes, Gabriela ORCID: https://orcid.org/0000-0002-1454-4979, King G, Jessica, Nunes, Ana, Colegrave, Nick and Hoffmann, Ary A (2019) 'The effects of individual non-heritable variation on fitness estimation and coexistence'. Ecology and Evolution, Vol 9, Issue 16, pp. 8995-9004.

Gray, K. J. and French, Neil (2004) 'Other bacteria and HIV disease'. Tropical Doctor, Vol 34, Issue 4, pp. 206-208.

Haak, Bastiaan W, de Jong, Hanna K, Kostidis, Sarantos, Giera, Martin, Maude, Rapeephan R, Samad, Rasheda, Wijedoru, Lalith, Ghose, Aniruddha, Faiz, Mohammed Abul, Parry, Christopher and Wiersinga, W Joost (2020) 'Altered Patterns of Compositional and Functional Disruption of the Gut Microbiota in Typhoid Fever and Nontyphoidal Febrile Illness'. Open Forum Infectious Diseases, Vol 7, Issue 7, ofaa251.

Hammarlöf, Disa L, Kröger, Carsten, Owen, Siân V, Canals, Rocío, Lacharme-Lora, Lizeth, Wenner, Nicolas, Schager, Anna E, Wells, Timothy J, Henderson, Ian R, Wigley, Paul, Hokamp, Karsten, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405, Gordon, Melita A and Hinton, Jay C D (2018) 'Role of a single non-coding nucleotide in the evolution of an epidemic African clade of Salmonella'. Proceedings of the National Academy of Sciences of the United States of America, Vol 115, Issue 11, e261418-e2623.

Hansen, Richard, Sanderson, Ian R., Muhammed, Rafeeq, Allen, Stephen ORCID: https://orcid.org/0000-0001-6675-249X, Tzivinikos, Christos, Henderson, Paul, Gervais, Lisa, Jeffery, Ian B., Mullins, David P., O'Herlihy, Eileen A., Weinberg, John D., Kitson, Geoff, Russell, Richard K. and Wilson, David C. (2021) 'A Double-Blind, Placebo-Controlled Trial to Assess Safety and Tolerability of (Thetanix) Bacteroides thetaiotaomicron in Adolescent Crohn's Disease'. Clinical and Translational Gastroenterology, Vol 12, Issue 1, e00287.

Hoerauf, Achim, Mand, Sabine, Volkmann, Lars, Büttner, Marcelle, Marfo-Debrekyei, Yeboah, Taylor, Mark ORCID: https://orcid.org/0000-0003-3396-9275, Adjei, Ohene and Büttner, Dietrich. W. (2003) 'Doxycycline in the treatment of human onchocerciasis: kinetics of Wolbachia endobacteria reduction and of inhibition of embryogenesis in female Onchocerca worms'. Microbes and Infection, Vol 5, Issue 4, pp. 261-273.

Hornett, Emily and Hurst, Gregory (2023) 'One strain may hide another: Cryptic male-killing Wolbachia'. PLOS Biology, Vol 21, Issue 3, e3002076.

Hornett, Emily, Kageyama, Daisuke and Hurst, Gregory D D (2022) 'Sex determination systems as the interface between male-killing bacteria and their hosts.'. Proceedings of the Royal Society B-Biological Sciences, Vol 289, Issue 1972, p. 20212781.

Jeffreys, Laura ORCID: https://orcid.org/0000-0002-0607-6116, Ardrey, Alison, Hafiz, Taghreed, Dyer, Lauri-Anne, Warman, Ashley, Mosallam, Nada, Nixon, Gemma, Fisher, Nicholas, Hong, W. David, Leung, Suet C., Aljayyoussi, Ghaith, Bibby, Jaclyn, Almeida, Deepak V., Converse, Paul J., Fotouhi, Nader, Berry, Neil G., Nuermberger, Eric L., Upton, Anna M., O’Neill, Paul M., Ward, Steve ORCID: https://orcid.org/0000-0003-2331-3192 and Biagini, Giancarlo ORCID: https://orcid.org/0000-0001-6356-6595 (2023) 'Identification of 2-Aryl-Quinolone Inhibitors of Cytochrome bd and Chemical Validation of Combination Strategies for Respiratory Inhibitors against Mycobacterium tuberculosis'. ACS Infectious Diseases, Vol 9, Issue 2, pp. 221-238.

Kadambari, Seilesh, Feng, Shuo, Liu, Xinxue, Andersson, Monique, Waterfield, Rebecca, Fodder, Harriet, Jacquemot, Aimee, Galal, Ushma, Rafferty, Aisling, Drew, Richard J., Rodrigues, Charlene, Sadarangani, Manish, Riordan, Andrew, Martin, Natalie G., Defres, Sylviane, Solomon, Tom, Pollard, Andrew J. and Paulus, Stephane (2024) 'Evaluating the Impact of the BioFire FilmArray in Childhood Meningitis: An Observational Cohort Study'. Pediatric Infectious Disease Journal, Vol 43, Issue 4, pp. 345-349.

Kakiuchi, Satoshi, Suzuki, Motoi, Parry, Christopher, Yasunami, Michio and Morimoto, Konosuke (2018) '1447. Molecular Epidemiology, Serotype Distribution, Antimicrobial Sensitivity, and Clinical Findings of adult Pneumococcal Pneumonia Patients in Japan: Hospital-Based Study'. Open Forum Infectious Diseases, Vol 5, Issue suppl_1, S448.

Kalizang’oma, Akuzike, Kwambana-Adams, Brenda, Chan, Jia Mun, Viswanath, Aishwarya, Gori, Andrea, Richard, Damien, Jolley, Keith A., Lees, John, Goldblatt, David, Beleza, Sandra, Bentley, Stephen D., Heyderman, Robert S., Chaguza, Chrispin and Dekker, John P. (2022) 'Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis'. Journal of Clinical Microbiology, Vol 61, Issue 1.

Kariuki, S., Gilks, C.F., Kimari, J., Muyodi, J., Getty, B. and Hart, C. Anthony (2002) 'Carriage of potentially pathogenic Escherichia coli in chickens'. Avian Diseases, Vol 46, Issue 3, pp. 721-724.

Lester, Rebecca ORCID: https://orcid.org/0000-0002-0259-9630, Musicha, Patrick, Kawaza, Kondwani, Langton, Josephine, Mango, James, Mangochi, Helen, Bakali, Winnie, Pearse, Oliver, Mallewa, Jane, Denis, Brigitte, Bilima, Sithembile, Gordon, Stephen ORCID: https://orcid.org/0000-0001-6576-1116, Lalloo, David ORCID: https://orcid.org/0000-0001-7680-2200, Jewell, Christopher P and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2022) 'Effect of resistance to third-generation cephalosporins on morbidity and mortality from bloodstream infections in Blantyre, Malawi: a prospective cohort study.'. Lancet Microbe, Vol 3, Issue 12, e922-e930.

Liam, Shaw, Smith, Andrew and Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088 (2017) 'The Oral Microbiome'. Emerging Topics in Life Sciences, Vol 1, Issue 4, pp. 287-296.

Lima, Cassio, Ahmed, Shwan, Xu, Yun, Muhamadali, Howbeer, Parry, Christopher, McGalliard, Rachel J., Carrol, Enitan D. and Goodacre, Royston (2022) 'Simultaneous Raman and infrared spectroscopy: a novel combination for studying bacterial infections at the single cell level'. Chemical Science, Vol 13, Issue 27, pp. 8171-8179.

MacLennan, C. A., Gondwe, Esther, Msefula, Chisomo, Kingsley, R. A., Thomson, N. R., White, S. A., Goodall, M., Pickard, D. J., Graham, Stephen, Dougan, G., Hart, C. Anthony, Molyneux, Malcolm E and Drayson, M. T. (2008) 'The neglected role of antibody in protection against bacteremia caused by nontyphoidal strains of Salmonella in African children'. Journal of Clinical Investigation, Vol 118, Issue 4, pp. 1553-1562.

Manyahi, Joel, Moyo, Sabrina, Kibwana, Upendo, Goodman, Richard, Allman, Ellie, Hubbard, Alasdair ORCID: https://orcid.org/0000-0001-6668-9179, Blomberg, Bjorn, Langeland, Nina and Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088 (2022) 'First identification of blaNDM-5 producing Escherichia coli from neonates and HIV infected adult in Tanzania.'. Journal of Medical Microbiology, Vol 71, Issue 2, e001513.

Martino, F, Tijet, N, Melano, R, Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, De Belder, D, Faccone, D, Biondi, E, Rodrigo, V, Vaguez, M, Pasteran, F, Thomson, NR, Corso, A and Gomez, SA (2019) 'Isolation of five Enterobacteriaceae species harbouring blaNDM-1 and mcr-1 plasmids from a single paediatric patient'. PLoS ONE, Vol 14, Issue 9, E0221960.

McGalliard, Rachel, Muhamadali, Howbeer, AlMasoud, Najla, Haldenby, Sam, Romero-Soriano, Valeria, Allman, Ellie, Xu, Yun, Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088, Paterson, Steve, Carrol, Enitan D and Goodacre, Royston (2024) 'Bacterial discrimination by Fourier transform infrared spectroscopy, MALDI-mass spectrometry and whole-genome sequencing'. Future Microbiology, Vol 19, Issue 9, pp. 795-810.

McGarry, Helen F., Egerton, Gillian and Taylor, Mark ORCID: https://orcid.org/0000-0003-3396-9275 (2004) 'Population dynamics of Wolbachia bacterial endosymbionts in Brugia malayi'. Molecular and Biochemical Parasitology, Vol 135, Issue 1, pp. 57-67.

Miyajima, Fabio, Roberts, Paul, Swale, Andrew, Price, Valerie, Jones, Maureen, Horan, Michael, Beeching, Nicholas ORCID: https://orcid.org/0000-0002-7019-8791, Brazier, Jonathan, Parry, Christopher, Pendleton, Neil and Pirmohamed, Munir (2011) 'Characterisation and Carriage Ration of Clostridium difficile Strains Isolated from a Community-Dwelling Elderly Population in the United Kingdom'. PLoS ONE, Vol 6, Issue 8, e22804.

Molina-Moya, Barbara, Abdurrahman, Saddiq T, Madukaji, Laura I, Kiréopori Gomgnimbou, Michel, Spinasse, Lizania, Gomes-Fernandes, Meissiner, Magdinier Gomes, Harrison, Kacimi, Sarah, Dacombe, Russell ORCID: https://orcid.org/0000-0002-6705-1537, Bimba, John S, Lawson, Lovett, Sola, Christophe, Cuevas, Luis E ORCID: https://orcid.org/0000-0002-6581-0587 and Dominguez, Jose (2018) 'Genetic characterization of Mycobacterium tuberculosis complex isolates circulating in Abuja, Nigeria'. Infection and Drug Resistance, Vol Volume 2018:, Issue 11, pp. 1617-1625.

Mwapasa, Taonga, Chidziwisano, Kondwani, Mphasa, Madalitso, Cocker, Derek, Rimella, Lorenzo, Amos, Stevie, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 and Morse, Tracy (2024) 'Key environmental exposure pathways to antimicrobial resistant bacteria in southern Malawi: A SaniPath approach.'. Science of The Total Environment, Vol 945, p. 174142.

Mäklin, Tommi, Kallonen, Teemu, Alanko, Jarno, Samuelsen, Ørjan, Hegstad, Kristin, Mäkinen, Veli, Corander, Jukka, Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756 and Honkela, Antti (2021) 'Bacterial genomic epidemiology with mixed samples'. Microbial Genomics, Vol 7, Issue 11.

Nikolaou, Elissavet, Hubbard, Alasdair ORCID: https://orcid.org/0000-0001-6668-9179, Botelho, João, Marschall, Taylor, Ferreira, Daniela ORCID: https://orcid.org/0000-0002-0594-0902 and Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088 (2020) 'Antibiotic Resistance Is Associated with Integrative and Conjugative Elements and Genomic Islands in Naturally Circulating Streptococcus pneumoniae Isolates from Adults in Liverpool, UK'. Genes, Vol 11, Issue 6, p. 625.

Nyazika, Tinashe, Sibale, Lusako, Phiri, Joseph, De Ste Croix, Megan, Jasiunaite, Zydrune, Mkandawire, Christopher, Malamba, Rose, Kankwatira, Anstead, Manduwa, Miriam, Ferreira, Daniela ORCID: https://orcid.org/0000-0002-0594-0902, Nyirenda, Tonney S., Oggioni, Marco R., Mwandumba, Henry ORCID: https://orcid.org/0000-0003-4470-3608 and Jambo, Kondwani ORCID: https://orcid.org/0000-0002-3195-2210 (2022) 'Intracellular survival of Streptococcus pneumoniae in human alveolar macrophages is augmented with HIV infection'. Frontiers in Immunology, Vol 13, e992659.

Obolski, Uri, Gori, Andrea, Lourenço, José, Thompson, Craig, Thompson, Robin, French, Neil, Heyderman, Robert S and Gupta, Sunetra (2019) 'Identifying genes associated with invasive disease in S. pneumoniae by applying a machine learning approach to whole genome sequence typing data.'. Scientific Reports, Vol 9, Issue 1, p. 4049.

Perez-Sepulveda, Blanca M, Heavens, Darren, Pulford, Caisey V, Predeus, Alexander V, Low, Ross, Webster, Hermione, Dykes, Gregory F, Schudoma, Christian, Rowe, Will, Lipscombe, James, Watkins, Chris, Kumwenda, Benjamin, Shearer, Neil, Costigan, Karl, Baker, Kate S, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405, Hinton, Jay C D and Hall, Neil (2021) 'An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes.'. Genome Biology, Vol 22, Issue 1, e349.

Pollard, Andrew J, Savulescu, Julian, Oxford, John, Hill, Adrian Vs, Levine, Myron M, Lewis, David Jm, Read, Robert C, Graham, David Y, Sun, Wellington, Openshaw, Peter and Gordon, Stephen ORCID: https://orcid.org/0000-0001-6576-1116 (2012) 'Human microbial challenge: the ultimate animal model.'. Lancet Infectious Diseases, Vol 12, Issue 12, pp. 903-5.

Price, Vivien, Ngwira, Lucky Gift, Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188, Baker, Kate S., Peacock, Sharon J., Jauneikaite, Elita and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2023) 'A systematic review of economic evaluations of whole-genome sequencing for the surveillance of bacterial pathogens'. Microbial Genomics, Vol 9, Issue 2, e000947.

Rahman, M. Ajijur, Mullany, Peter and Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088 (2017) 'Draft Genome Sequence of Eggerthia catenaformis Strain MAR1 Isolated from Saliva of Healthy Humans'. Genome Announcements, Vol 5, Issue 28, vol. 5 no. 28 e00638.

Rickman, Hannah M., Kamchedzera, Wala, Schwalb, Alvaro, Phiri, Mphatso D., Ruhwald, Morten, Shanaube, Kwame, Dodd, Peter J., Houben, Rein M. G. J., Corbett, Elizabeth L. and MacPherson, Peter ORCID: https://orcid.org/0000-0002-0329-9613 (2022) 'Know your tuberculosis epidemic–Is it time to add Mycobacterium tuberculosis immunoreactivity back into global surveillance?'. PLOS Global Public Health, Vol 2, Issue 10, e0001208.

Sartorius, Benn, Gray, Authia P, Davis Weaver, Nicole, Robles Aguilar, Gisela, Swetschinski, Lucien R, Ikuta, Kevin S, Mestrovic, Tomislav, Chung, Erin, Wool, Eve E, Han, Chieh, Gershberg Hayoon, Anna, Araki, Daniel T, Abd-Elsalam, Sherief, Aboagye, Richard Gyan, Adamu, Lawan Hassan, Adepoju, Abiola Victor, Ahmed, Ayman, Akalu, Gizachew Taddesse, Akande-Sholabi, Wuraola, Amuasi, John H, Amusa, Ganiyu Adeniyi, Argaw, Ayele Mamo, Aruleba, Raphael Taiwo, Awoke, Tewachew, Ayalew, Melese Kitu, Azzam, Ahmed Y, Babin, Francois-Xavier, Banerjee, Indrajit, Basiru, Afisu, Bayileyegn, Nebiyou Simegnew, Belete, Melaku Ashagrie, Berkley, James A, Bielicki, Julia A, Dekker, Denise, Demeke, Dessalegn, Demsie, Desalegn Getnet, Dessie, Anteneh Mengist, Dunachie, Susanna J, Ed-Dra, Abdelaziz, Ekholuenetale, Michael, Ekundayo, Temitope Cyrus, El Sayed, Iman, Elhadi, Muhammed, Elsohaby, Ibrahim, Eyre, David, Fagbamigbe, Adeniyi Francis, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405, Fekadu, Ginenus, Fell, Frederick, Forrest, Karen M, Gebrehiwot, Mesfin, Gezae, Kebede Embaye, Ghazy, Ramy Mohamed, Hailegiyorgis, Tewodros Tesfa, Haines-Woodhouse, Georgina, Hasaballah, Ahmed I, Haselbeck, Andrea Haekyung, Hsia, Yingfen, Iradukunda, Arnaud, Iregbu, Kenneth Chukwuemeka, Iwu, Chidozie C D, Iwu-Jaja, Chinwe Juliana, Iyasu, Assefa N, Jaiteh, Fatoumatta, Jeon, Hyonjin, Joshua, Charity Ehimwenma, Kassa, Gebrehiwot G, Katoto, Patrick DMC, Krumkamp, Ralf, Kumaran, Emmanuelle A P, Kyu, Hmwe Hmwe, Manilal, Aseer, Marks, Florian, May, Jürgen, McLaughlin, Susan A, McManigal, Barney, Melese, Addisu, Misgina, Kebede Haile, Mohamed, Nouh Saad, Mohammed, Mustapha, Mohammed, Shafiu, Mohammed, Shikur, Mokdad, Ali H, Moore, Catrin E, Mougin, Vincent, Mturi, Neema, Mulugeta, Temesgen, Musaigwa, Fungai, Musicha, Patrick, Musila, Lillian A, Muthupandian, Saravanan, Naghavi, Pirouz, Negash, Hadush, Nuckchady, Dooshanveer C, Obiero, Christina W, Odetokun, Ismail A, Ogundijo, Oluwaseun Adeolu, Okidi, Lawrence, Okonji, Osaretin Christabel, Olagunju, Andrew T, Olufadewa, Isaac Iyinoluwa, Pak, Gi Deok, Perovic, Olga, Pollard, Andrew, Raad, Mathieu, Rafaï, Clotaire, Ramadan, Hazem, Redwan, Elrashdy Moustafa Mohamed, Roca, Anna, Rosenthal, Victor Daniel, Saleh, Mohamed A, Samy, Abdallah M, Sharland, M, Shittu, Aminu, Siddig, Emmanuel Edwar, Sisay, Eskinder Ayalew, Stergachis, Andy, Tesfamariam, Wegen Beyene, Tigoi, Caroline, Tincho, Marius Belmondo, Tiruye, Tenaw Yimer, Umeokonkwo, Chukwuma David, Walsh, Timothy, Walson, Judd L, Yusuf, Hadiza, Zeru, Naod Gebrekrstos, Hay, Simon I, Dolecek, Christiane, Murray, Christopher J L and Naghavi, Mohsen (2023) 'The burden of bacterial antimicrobial resistance in the WHO African region in 2019: a cross-country systematic analysis'. Lancet Global Health, Vol 12, Issue 2, e201-e216.

Stanley, Sydney, Spaulding, Caitlin N, Liu, Qingyun, Chase, Michael R, Ha, Dang Thi Minh, Thai, Phan Vuong Khac, Lan, Nguyen Huu, Thu, Do Dang Anh, Quang, Nguyen Le, Brown, Jessica, Hicks, Nathan D, Wang, Xin, Marin, Maximillian, Howard, Nicole C, Vickers, Andrew J, Karpinski, Wiktor M, Chao, Michael C, Farhat, Maha R, Caws, Maxine ORCID: https://orcid.org/0000-0002-9109-350X, Dunstan, Sarah J, Thuong, Nguyen Thuy Thuong and Fortune, Sarah M (2024) 'Identification of bacterial determinants of tuberculosis infection and treatment outcomes: a phenogenomic analysis of clinical strains.'. Lancet Microbe, Vol 5, Issue 6, e570-e580.

Tamarozzi, Francesca, Halliday, Alice, Gentil, Katrin, Hoerauf, Achim, Pearlman, Eric and Taylor, Mark ORCID: https://orcid.org/0000-0003-3396-9275 (2011) 'Onchocerciasis: the role of Wolbachia bacterial endosymbionts in parasite biology, disease pathogenesis, and treatment.'. Clinical microbiology reviews, Vol 24, Issue 3, pp. 459-68.

Taylor, M. J. ORCID: https://orcid.org/0000-0003-3396-9275 (2003) 'Wolbachia in the inflammatory pathogenesis of human filariasis'. Annals of the New York Academy of Sciences, Vol 990, pp. 444-449.

Taylor, Mark ORCID: https://orcid.org/0000-0003-3396-9275, Voronin, Denis, Johnston, Kelly and Ford, Louise (2013) 'Wolbachia filarial interactions.'. Cellular microbiology, Vol 15, Issue 4, pp. 520-26.

Thai, Phan Vuong Khac, Ha, Dang Thi Minh, Hanh, Nguyen Thi, Day, Jeremy, Dunstan, Sarah, Nhu, Nguyen Thi Quynh, Kiet, Vo Sy, Lan, Nguyen Huu, Dung, Nguyen Huy, Lan, Nguyen Thi Ngoc, Thuong, Nguyen Thuong, Lan, Nguyen Ngoc, Liễu, Phạm Thị Thúy, Hồng, Nguyễn Thị, Điệp, Đào Công, Thanh, Nguyễn Thị Kim, Hội, Nguyễn Văn, Nghĩa, Nguyễn Văn, Đại, Trương Ngọc, Minh, Hoàng Quang, Thơm, Nguyễn Văn, Farrar, Jeremy and Caws, Maxine ORCID: https://orcid.org/0000-0002-9109-350X (2018) 'Bacterial risk factors for treatment failure and relapse among patients with isoniazid resistant tuberculosis'. BMC Infectious Diseases, Vol 18, Issue 1.

Thomas, J. E., Bunn, J., Kleanthous, H., Monath, T. P., Harding, M., Coward, W. A. and Weaver, L. T. (2004) 'Specific immunoglobulin A antibodies in maternal milk and delayed Helicobacter pylori colonization in Gambian infants'. Clinical Infectious Diseases, Vol 39, Issue 8, pp. 1155-1160.

Thomas, Jennifer Dolan, Hatcher, Cynthia P, Satterfield, Dara A, Theodore, M Jordan, Bach, Michelle C, Linscott, Kristin B, Zhao, Xin, Wang, Zin, Mair, Raydel, Schmink, Susanna, Arnold, Kathryn E, Stephens, David S, Harrison, Lee H, Hollick, Rosemary A, Andrade, Ana Lucia, Lamaro-Cardosa, Juliana, de Lemos, Ana Paula S, Gritzfeld, Jenna, Gordon, Stephen ORCID: https://orcid.org/0000-0001-6576-1116, Soysal, Ahmet, Bakir, Mustafa, Sharma, Dolly, Jain, Shabnam, Satola, Sarah W, Messonnier, Nancy and Mayer, Leonard W (2011) 'sodC-Based Real-Time PCR for Detection of Neisseria meningitidis'. PLoS ONE, Vol 6, Issue 5, e19361.

Walker, Thomas, Quek, Shannon ORCID: https://orcid.org/0000-0002-1583-9541, Jeffries, Claire L., Bandibabone, Janvier, Dhokiya, Vishaal, Bamou, Roland, Kristan, Mojca, Messenger, Louisa A., Gidley, Alexandra, Hornett, Emily, Anderson, Enyia, Cansado-Utrilla, Cintia, Hegde, Shivanand, Bantuzeko, Chimanuk, Stevenson, Jennifer, Lobo, Neil F., Wagstaff, Simon ORCID: https://orcid.org/0000-0003-0577-5537, Nkondjio, Christophe Antonio, Irish, Seth R., Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756 and Hughes, Grant ORCID: https://orcid.org/0000-0002-7567-7185 (2021) 'Stable high-density and maternally inherited Wolbachia infections in Anopheles moucheti and Anopheles demeilloni mosquitoes'. Current Biology, Vol 31, Issue 11, pp. 2310-2320.

Wall, Emma, Gordon, Stephen ORCID: https://orcid.org/0000-0001-6576-1116, Hussain, Samia, Goonetilleke, Upali, Gritzfeld, Jenna, Scarborough, Matthew and Kadioglu, Aras (2012) 'Persistence of Pneumolysin in the Cerebrospinal Fluid of Patients With Pneumococcal Meningitis Is Associated With Mortality'. Clinical Infectious Diseases, Vol 54, Issue 5, pp. 701-705.

Wright, Adam (2009) 'Mucosal perspectives in pneumococcal vaccine development: A meeting summary: A one-day international workshop focusing on stimulating research and collaborations on this topic.'. Vaccine, Vol 28, Issue 1, pp. 2-6.

Book Section

Beeching, Nicholas ORCID: https://orcid.org/0000-0002-7019-8791 (2016) 'Endemic treponematoses' in: Infectious Diseases, 4th edition, volume 2, London, Elsevier, pp. 961-965.

Cantillon, Daire ORCID: https://orcid.org/0000-0002-2180-373X and Waddell, Simon J (2024) 'Three-Dimensional Rotary Culture to Model Mycobacterial Biofilms in Low-Shear Detergent-Free Liquid Suspension.' in: Antibiotic Resistance Protocols. Methods in Molecular Biology, 2833, New York, Humana Press, pp. 11-21.

Conference or Workshop Item

Perez-Sepulveda, Blanca, Heavens, Darren, Pulford, Caisey, Predeus, Alexander, Low, Ross, Webster, Hermione, Dykes, Gregory, Schudoma, Christian, Rowe, Will, Lipscombe, James, Watkins, Chris, Kumwenda, Benjamin, Shearer, Neil, Costigan, Karl, Baker, Kate, Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405, Hinton, Jay and Hall, Neil (2022) 'How to sequence 10,000 bacterial genomes and retain your sanity: an accessible, efficient and global approach' in Meeting.

Thesis

Adler, Hugh ORCID: https://orcid.org/0000-0003-4437-2298 (2019) Pneumococcal nasopharyngeal colonisation in adults, Thesis (Doctoral), Liverpool School of Tropical Medicine.

Lester, Rebecca ORCID: https://orcid.org/0000-0002-0259-9630 (2021) Third-generation cephalosporin resistance in Blantyre, Malawi: transmission and outcomes, Thesis (Doctoral), Liverpool School of Tropical Medicine.

Pojar, Sherin ORCID: https://orcid.org/0000-0002-7746-3279 (2021) Susceptibility to pneumococcal colonization: identifying critical pneumococcal and mucosal markers, Thesis (Doctoral), Liverpool School of Tropical Medicine.