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Article
Allen, Angie, Premawardhena, Anuja, Allen, Stephen ORCID: https://orcid.org/0000-0001-6675-249X, Rodrigo, Rexan, Manamperi, Aresha, Perera, Luxman, Wray, Katherine, Armitage, Andrew, Fisher, Christopher, Drakesmith, Alexander, Robson, Kathryn and Weatherall, David (2019) 'The p.H63D allele of the HFE gene protects against low iron stores in Sri Lanka.'. Blood Cells, Molecules, and Diseases, Vol 76, pp. 72-77.
Barnes, Kayla G, Irving, Helen, Chiumia, Martin, Mzilahowa, Themba, Coleman, Michael ORCID: https://orcid.org/0000-0003-4186-3526, Hemingway, Janet ORCID: https://orcid.org/0000-0002-3200-7173 and Wondji, Charles ORCID: https://orcid.org/0000-0003-0791-3673 (2016) 'Restriction to gene flow is associated with changes in the molecular basis of pyrethroid resistance in the malaria vector Anopheles funestus'. Proceedings of the National Academy of Sciences of the United States of America, Vol 114, Issue 2, pp. 286-291.
Biagini, Giancarlo ORCID: https://orcid.org/0000-0001-6356-6595, Fidock, D. A., Bray, Patrick and Ward, Stephen ORCID: https://orcid.org/0000-0003-2331-3192 (2005) 'Mutations conferring drug resistance in malaria parasite drug transporters Pgh1 and PfCRT do not affect steady-state vacuolar Ca2+ [Letter to the Editor]'. Antimicrobial Agents and Chemotherapy, Vol 49, Issue 11, pp. 4807-4808.
Blandin, S. A., Wang-Sattler, R., Lamacchia, M., Gagneur, J., Lycett, Gareth ORCID: https://orcid.org/0000-0002-2422-053X, Ning, Y., Levashina, E. A. and Steinmetz, L. M. (2009) 'Dissecting the genetic basis of resistance to malaria parasites in Anopheles gambiae'. Science, Vol 326, Issue 5949, pp. 147-150.
Casewell, Nicholas ORCID: https://orcid.org/0000-0002-8035-4719 (2017) 'Evolution: Gene Co-option Underpins Venom Protein Evolution.'. Current Biology, Vol 27, Issue 13, R647-R649.
Cave, Rory, Kalizang'oma, Akuzike, Chaguza, Chrispin, Mwalukomo, Thandie S., Kamng’ona, Arox, Brown, Comfort, Msefula, Jacquline, Bonomali, Farouck, Nyirenda, Roseline, Swarthout, Todd D., Kwambana, Brenda, French, Neil and Heyderman, Robert S. (2024) 'Expansion of pneumococcal serotype 23F and 14 lineages with genotypic changes in capsule polysaccharide locus and virulence gene profiles post introduction of pneumococcal conjugate vaccine in Blantyre, Malawi'. Microbial Genomics, Vol 10, Issue 6, e001264.
Clark, T. G., Diakite, M., Auburn, S., Campino, S., Fry, A. E., Green, A., Richardson, A., Small, K., Teo, Y. Y., Wilson, J., Jallow, M., Sisay-Joof, F., Pinder, M., Griffiths, M. J., Peshu, N., Williams, T. N., Marsh, Kevin, Molyneux, Malcolm E, Taylor, T. E., Rockett, K. A. and Kwiatkowski, D. P. (2009) 'Tumor Necrosis Factor and Lymphotoxin-alpha Polymorphisms and Severe Malaria in African Populations'. Journal of Infectious Disease, Vol 199, Issue 4, pp. 569-575.
Cwiklinski, Krystyna, Dalton, John Pius, Dufresne, Philippe J, LaCourse, James ORCID: https://orcid.org/0000-0001-9261-7136, Williams, Diana Jl, Hodgkinson, Jane and Paterson, Steve (2015) 'The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution.'. Genome Biology, Vol 16, e71.
Delpisheh, Ali, Topping, J., Reyad, M., Tang, A. and Brabin, Bernard (2008) 'Prenatal alcohol exposure, CYP17 gene polymorphisms and fetal growth restriction'. European Journal of Obstetrics Gynecology and Reproductive Biology, Vol 138, Issue 1, pp. 49-53.
Du, Guo-Li, Luo, Jun-Yi, Wang, Duolao ORCID: https://orcid.org/0000-0003-2788-2464, Li, Yan-Hong, Fang, Bin-Bin, Li, Xiao-Mei, Gao, Xiao-Ming and Yang, Yi-Ning (2020) 'MIF gene rs755622 polymorphism positively associated with acute coronary syndrome in Chinese Han population: case–control study'. Scientific Reports, Vol 10, Issue 1.
Fry, A. E., Auburn, S., Diakite, M., Green, A., Richardson, A., Wilson, J., Jallow, M., Sisay-Joof, F., Pinder, M., Griffiths, M. J., Peshu, N., Williams, T. N., Marsh, Kevin, Molyneux, Malcolm E, Taylor, T. E., Rockett, K. A. and Kwiatkowski, D. P. (2008) 'Variation in the ICAM1 gene is not associated with severe malaria phenotypes'. Genes and Immunity, Vol 9, Issue 5, pp. 462-469.
Fuxelius, H. H., Darby, Alistair C., Cho, N. H. and Andersson, S. G. E. (2008) 'Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction'. Genome Biology, Vol 9, Issue 2, R42.
Gallichotte, Emily N., Dobos, Karen M., Ebel, Gregory D., Hagedorn, Mary, Rasgon, Jason L., Richardson, Jason, Stedman, Timothy T. and Barfield, Jennifer P. (2021) 'Towards a method for cryopreservation of mosquito vectors of human pathogens'. Cryobiology, Vol 99, pp. 1-10.
Gatei, Wangeci, Kariuki, S., Hawley, W., terKuile, Feiko ORCID: https://orcid.org/0000-0003-3663-5617, Terlouw, Anja ORCID: https://orcid.org/0000-0001-5327-8995, Phillips-Howard, P., Nahlen, B., Gimnig, J., Lindblade, K., Walker, E., Williamson, J., Hamel, M., Escalante, A., Slutsker, L. and Shi, Y. P. (2008) 'Effects of Insecticide Treated Bednets (ITN's) on the Genetic Diversity of Plasmodium Falciparum Parasites in a Malaria Holoendemic Area of Western Kenya'. American Journal of Tropical Medicine and Hygiene, Vol 79, Issue 6 Supp, p. 63.
Gauld, Jillian S, Olgemoeller, Franziska, Heinz, Eva ORCID: https://orcid.org/0000-0003-4413-3756, Nkhata, Rose, Bilima, Sithembile, Wailan, Alexander M, Kennedy, Neil, Mallewa, Jane, Gordon, Melita A, Read, Jonathan M, Heyderman, Robert S, Thomson, Nicholas R, Diggle, Peter J and Feasey, Nicholas ORCID: https://orcid.org/0000-0003-4041-1405 (2022) 'Spatial and genomic data to characterize endemic typhoid transmission'. Clinical Infectious Diseases, Vol 74, Issue 11, pp. 1993-2000.
Goodhead, Ian, Capewell, Paul, Bailey, Wendi, Beament, Tanja, Chance, Michael, Kay, Suzanne, Forrester, Sarah, MacLeod, Annette, Taylor, Mark ORCID: https://orcid.org/0000-0003-3396-9275, Noyes, Harry and Hall, Neil (2013) 'Whole-genome sequencing of Trypanosoma brucei reveals introgression between subspecies that is associated with virulence.'. mBio, Vol 4, Issue 4, e00197-13.
Goodman, Richard, Tansirichaiya, Supathep, Brouwer, Michael S M and Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088 (2023) 'Intracellular Transposition of Mobile Genetic Elements Associated with the Colistin Resistance Gene mcr-1'. Microbiology Spectrum, Vol 11, Issue 1, e03278-22.
Grau-Bové, Xavier and Weetman, David ORCID: https://orcid.org/0000-0002-5820-1388 (2020) 'RNA editing: an overlooked source of fine-scale adaptation in insect vectors?'. Current Opinion in Insect Science, Vol 40, pp. 48-55.
Hastings, Ian ORCID: https://orcid.org/0000-0002-1332-742X, Paget-McNicol, S. and Saul, A. (2004) 'Can mutation and selection explain virulence in human P-falciparum infections?'. Malaria Journal, Vol 3, Issue 2.
Hastings, Ian ORCID: https://orcid.org/0000-0002-1332-742X, Hardy, Diggory, Kay, Katherine and Sharma, Raman (2020) 'Incorporating genetic selection into individual‐based models of malaria and other infectious diseases'. Evolutionary Applications, Vol 13, Issue 10, pp. 2723-2739.
Hastings, Ian ORCID: https://orcid.org/0000-0002-1332-742X (2001) 'Reproductive compensation and human genetic disease'. Genetical Research, Vol 77, Issue 3, pp. 277-283.
Hearn, Jack ORCID: https://orcid.org/0000-0003-3358-4949, Plenderleith, Fiona and Little, Tom J. (2021) 'DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna'. Epigenetics & Chromatin, Vol 14, Issue 4.
Hearn, Jack ORCID: https://orcid.org/0000-0003-3358-4949, Clark, Jessica, Wilson, Philip J. and Little, Tom J. (2020) 'Daphnia magna modifies its gene expression extensively in response to caloric restriction revealing a novel effect on haemoglobin isoform preference'. Molecular Ecology, Vol 29, Issue 17, pp. 3261-3276.
Hearn, Jack ORCID: https://orcid.org/0000-0003-3358-4949, Pearson, Marianne, Blaxter, Mark, Wilson, Philip J. and Little, Tom J. (2019) 'Genome-wide methylation is modified by caloric restriction in Daphnia magna'. BMC Genomics, Vol 20, Issue 1, e197.
Hearn, Jack ORCID: https://orcid.org/0000-0003-3358-4949, Blaxter, Mark, Scho¨nrogge, Karsten, Nieves-Aldrey, Jose´-Luis, Pujade-Villar, Juli, Hugue, Elisabeth, Drezen, Jean-Michel, Shorthouse, Joseph D. and Stone, Graham N (2019) 'Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp'. PLoS Genetics, Vol 15, Issue 11, e1008398.
Ibrahim, SulaimanSadi, Riveron, Jacob ORCID: https://orcid.org/0000-0002-5395-767X, Bibby, Jaclyn, Irving, Helen, YuntaYanes, Cristina, Paine, Mark ORCID: https://orcid.org/0000-0003-2061-7713, Wondji, Charles ORCID: https://orcid.org/0000-0003-0791-3673 and Copenhaver, Gregory P. (2015) 'Allelic Variation of Cytochrome P450s Drives Resistance to Bednet Insecticides in a Major Malaria Vector'. PLoS Genetics, Vol 11, Issue 10, e1005618.
Ishak, Intan H., Kamgang, Basile, Ibrahim, SulaimanSadi, Riveron, Jacob ORCID: https://orcid.org/0000-0002-5395-767X, Irving, Helen and Wondji, Charles ORCID: https://orcid.org/0000-0003-0791-3673 (2017) 'Pyrethroid Resistance in Malaysian Populations of Dengue Vector Aedes aegypti Is Mediated by CYP9 Family of Cytochrome P450 Genes.'. PLoS Neglected Tropical Diseases, Vol 11, Issue 1, e0005302.
Johnson, David and Ward, Stephen ORCID: https://orcid.org/0000-0003-2331-3192 (2008) 'Mechanisms of Drug Induced Gene Expression in Plasmodium Falciparum'. American Journal of Tropical Medicine and Hygiene, Vol 79, Issue 6 Supp, p. 301.
Kariuki, S. K., Ndanu, A. M., Njunge, J. M., Muiuvi, G. M., Gatei, Wangeci, terKuile, Feiko ORCID: https://orcid.org/0000-0003-3663-5617, Terlouw, Anja ORCID: https://orcid.org/0000-0001-5327-8995, Hawley, W. A., Phillips-Howard, P. A., Nahlen, B. L., Gimnig, J. E., Lindblade, K. A., Hamel, M. J., Williamson, J., Escalante, A., Slutsker, L. and Shi, Y. P. (2008) 'Effect of Insecticide-Treated Bed Nets (Itns) on Gene Polymorphisms of Plasmodium Falciparum Vaccine Candidate Antigens in a Malaria Holoendemic Area of Western Kenya'. American Journal of Tropical Medicine and Hygiene, Vol 79, Issue 6 Supp, pp. 303-304.
Keiser, P. B., Reynolds, S. M., Awadzi, K., Ottesen, E. A., Taylor, Mark ORCID: https://orcid.org/0000-0003-3396-9275 and Nutman, T. B. (2002) 'Bacterial endosymbionts of Onchocerca volvulus in the pathogenesis of posttreatment reactions'. Journal of Infectious Disease, Vol 185, Issue 6, pp. 805-811.
Kotliar, Dylan, Raju, Siddharth, Tabrizi, Shervin, Odia, Ikponmwosa, Goba, Augustine, Momoh, Mambu, Sandi, John Demby, Nair, Parvathy, Phelan, Eric, Tariyal, Ridhi, Eromon, Philomena E, Mehta, Samar, Robles-Sikisaka, Refugio, Siddle, Katherine J, Stremlau, Matt, Jalloh, Simbirie, Gire, Stephen K, Winnicki, Sarah, Chak, Bridget, Schaffner, Stephen F, Pauthner, Matthias, Karlsson, Elinor K, Chapin, Sarah R, Kennedy, Sharon G, Branco, Luis M, Kanneh, Lansana, Vitti, Joseph J, Broodie, Nisha, Gladden-Young, Adrianne, Omoniwa, Omowunmi, Jiang, Pan-Pan, Yozwiak, Nathan, Heuklom, Shannon, Moses, Lina M, Akpede, George O, Asogun, Danny A, Rubins, Kathleen, Kales, Susan, Happi, Anise N, Iruolagbe, Christopher O, Dic-Ijiewere, Mercy, Iraoyah, Kelly, Osazuwa, Omoregie O, Okonkwo, Alexander K, Kunz, Stefan, McCormick, Joseph B, Khan, S Humarr, Honko, Anna N, Lander, Eric S, Oldstone, Michael B A, Hensley, Lisa, Folarin, Onikepe A, Okogbenin, Sylvanus A, Günther, Stephan, Ollila, Hanna M, Tewhey, Ryan, Okokhere, Peter O, Schieffelin, John S, Andersen, Kristian G, Reilly, Steven K, Grant, Donald S, Garry, Robert F, Barnes, Kayla, Happi, Christian T and Sabeti, Pardis C (2024) 'Genome-wide association study identifies human genetic variants associated with fatal outcome from Lassa fever'. Nature Microbiology, Vol 9, pp. 751-762.
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Sahin-Tóth, Judit, Albert, Ervin, Juhász, Alexandra, Ghidán, Ágoston, Juhász, János, Horváth, Andrea, Steward, Martin C. and Dobay, Orsolya (2022) 'Prevalence of Staphylococcus aureus in wild hedgehogs (Erinaceus europaeus) and first report of mecC-MRSA in Hungary'. Science of The Total Environment, Vol 815, p. 152858.
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Shamsi, F. A., McCarroll, L., Hemingway, Janet ORCID: https://orcid.org/0000-0002-3200-7173, Al-Rajhi, A. and Boulton, M. (2008) 'Effect of age pigment lipofuscin on the expression of lysosomal and antioxidant enzymes in the RPE cells'. Febs Journal, Vol 275, Issue S1, 429-PP8.
SilvaMartins, Walter Fabricio, Silva Pereira, Bárbara Natieli, Vieira Alves, Ana Thayse, Murphy, Annabel, Silva Martins, Paulo Geovani, Weetman, David ORCID: https://orcid.org/0000-0002-5820-1388, Wilding, Craig Stephen and Donnelly, Martin ORCID: https://orcid.org/0000-0001-5218-1497 (2019) 'Development and application of a tri-allelic PCR assay for screening Vgsc-L1014F kdr mutations associated with pyrethroid and organochlorine resistance in the mosquito Culex quinquefasciatus.'. Parasites & Vectors, Vol 12, Issue 1, p. 232.
Simões, Bruno F, Sampaio, Filipa L, Douglas, Ronald H, Kodandaramaiah, Ullasa, Casewell, Nicholas ORCID: https://orcid.org/0000-0002-8035-4719, Harrison, Robert, Hart, Nathan S, Partridge, Julian C, Hunt, David M and Gower, David J (2016) 'Visual Pigments, Ocular Filters and the Evolution of Snake Vision.'. Molecular biology and evolution, Vol 33, Issue 10, pp. 2483-2495.
Sloan, Derek, McCallum, Andrew, Schipani, Alessandro, Egan, Deirdre, Mwandumba, Henry ORCID: https://orcid.org/0000-0003-4470-3608, Ward, Steve ORCID: https://orcid.org/0000-0003-2331-3192, Waterhouse, David, Banda, Gertrude, Allain, Theresa J, Owen, Andrew, Khoo, Saye H and Davies, Geraint R (2017) 'Genetic determinants of the pharmacokinetic variability of rifampicin in Malawian adults with pulmonary tuberculosis'. Antimicrobial Agents and Chemotherapy, Vol 61, Issue 7, e00210-e00217.
Stevenson, Bradley, Pignatelli, Patricia, Nikou, Dimitra and Paine, Mark J. I. ORCID: https://orcid.org/0000-0003-2061-7713 (2012) 'Pinpointing P450s Associated with Pyrethroid Metabolism in the Dengue Vector, Aedes aegypti: Developing New Tools to Combat Insecticide Resistance'. PLoS Neglected Tropical Diseases, Vol 6, Issue 3, e1595.
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Tansirichaiya, Supathep, Goodman, Richard, Guo, Xinyu, Bulgasim, Issra, Samuelsen, Ørjan, Al-Haroni, Mohammed and Roberts, Adam ORCID: https://orcid.org/0000-0002-0760-3088 (2022) 'Intracellular Transposition, and Capture of Mobile Genetic Elements, Following Intercellular Conjugation of Multidrug Resistance Conjugative Plasmids from Clinical Enterobacteriaceae Isolates.'. Microbiology Spectrum, Vol 10, Issue 1, e02140-21.
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Van't Hof, Arjen E, Campagne, Pascal, Rigden, Daniel J., Yung, Carl J., Lingley, Jessica, Quail, Michael A, Hall, Neil, Darby, Alistair C. and Saccheri, Ilik J. (2016) 'The industrial melanism mutation in British peppered moths is a transposable element'. Nature, Vol 534, pp. 102-105.
Wang, Guan-Hong, Du, Jie, Yi Chu, Chen, Madhav, Mukund, Hughes, Grant ORCID: https://orcid.org/0000-0002-7567-7185 and Champer, Jackson (2022) 'Symbionts and gene drive: two strategies to combat vector-borne disease'. Trends in Genetics, Vol 38, Issue 7, pp. 708-723.
Waples, R. S., Rodrigues Antao, Tiago and Luikart, G. (2014) 'Effects of Overlapping Generations on Linkage Disequilibrium Estimates of Effective Population Size'. Genetics, Vol 197, Issue 2, pp. 769-780.
Webster, Bonnie L, Emery, Aiden M, Webster, Joanne P, Gouvras, Anouk, Garba, Amadou, Diaw, Oumar, Seye, Mohmoudane M, Tchuente, Louis Albert Tchuem, Simoonga, Christopher, Mwanga, Joseph, Lange, Charles, Kariuki, Curtis, Mohammed, Khalfan A, Stothard, Russell ORCID: https://orcid.org/0000-0002-9370-3420 and Rollinson, David (2012) 'Genetic diversity within Schistosoma haematobium: DNA barcoding reveals two distinct groups.'. PLoS Neglected Tropical Diseases, Vol 6, Issue 10, e1882.
Weetman, David ORCID: https://orcid.org/0000-0002-5820-1388, Djogbenou, Luc and Lucas, Eric ORCID: https://orcid.org/0000-0003-3892-1668 (2018) 'Copy number variation (CNV) and insecticide resistance in mosquitoes: evolving knowledge or an evolving problem?'. Current Opinion in Insect Science, Vol 27, pp. 82-88.
Weetman, David ORCID: https://orcid.org/0000-0002-5820-1388 and Clarkson, Christopher S. (2015) 'Evolving the world's most dangerous animal'. Trends in Parasitology, Vol 31, Issue 2, pp. 39-40.
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Book Section
Black, William C, Gorrochetegui-Escalante, Norma, Randle, Nadine P. and Donnelly, Martin ORCID: https://orcid.org/0000-0001-5218-1497 (2008) 'The Yin and Yang of linkage disequilibrium: mapping of genes and nucleotides conferring insecticide resistance in insect disease vectors.' in: Transgenesis and the Management of Vector-Borne Disease, 627, New York, Springer, pp. 71-83.
Conference or Workshop Item
Muller, Pie, Donnelly, Martin ORCID: https://orcid.org/0000-0001-5218-1497 and Ranson, Hilary ORCID: https://orcid.org/0000-0003-2332-8247 (2005) 'Microarray analysis of genes mediating metabolic insecticide resistance in a pyrethroid resistant Anopheles gambiae s.s. strain from Ghana [MIM-PM-10428]' in 4th MIM Pan-African Malaria Conference, Yaounde, Cameroon, 13-18 November 2005.
Thesis
Lewis, Joseph ORCID: https://orcid.org/0000-0002-3837-5188 (2019) Causes and consequences of adult sepsis in Blantyre, Malawi, Thesis (Doctoral), Liverpool School of Tropical Medicine.